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== Remove contaminants from crude lysate pellet == <br/>1. Resuspend pellet in 1 mL glucose/Tris/EDTA solution <br/>2. Add RNAse to final concentration of 20 µg/mL and incubate 20 minutes at 37oC <br/>3. Add 2 mL freshly prepared 0.2M NaOH/1% SDS, mix by inverting the tube and let stand at room temperature for 5 – 10 minutes <br/>4. Add 1.5 mL of 3M potassium acetate solution, mix by inverting and let stand 5 – 10 min <br/>5. Centrifuge for 10 min at 20,000 x g (11,000 rpn in SS-34 rotor) <br/>6. Transfer the supernatant to clean tube <br/>White precipitate is SDS-potassium complex which includes chromosomal DNA remaining from crude lysate. <br/>7. Phenol/Chloroform extract and then extract with 24:1 chloroform/isoamyl alcohol <br/>8. Add ¼ volume of 10M ammonium acetate (2M final concentration) to aqueous phase and mix <br/>9. Add 2 volumes of 100% ethanol and place tube on dry ice for 10 minutes <br/>10. Pellet DNA by centrifuging 10 min at 10,000 x g (8000 rpm in SS-34 rotor) <br/>11. Wash pellet with 70% ethanol and air dry
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