Editing DNA Precipitation by PEG and Ethanol

[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC333871/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC333871/]

3X PEG Precipitation solution for recovering DNA with size > 150 bp

PEG40% PEG 8000, 30 mM MgCl2

1. Add 0.3 vol of PEG solution

2. Incubate for 10 min at RT

3. Spin for 10~30 min at RT.

4. Wash with 70% ethanol twice.



by 0.5 volumes of 40% (W/V) PEG 8000 (Sigma) or 2 volumes of 95&nbsp;% (v/v) ethanol and keeping for 10 min at the desired temperature. The precipitated DNA was then collected by centrifugation at the desired temperature for 30 min

In our study, the conditions used in the literature for precipitation of DNA by PEG [0.5-1 M NaCl, 5-10% (w/v) PEG, 4°C] did not give good recoveries of DNA when present at low (less than 1 ug/ml) concentrations. Maximum recoveries of DNA were observed when precipitation of DNA was carried out at a PEG concentration of 13% in the presence of 10 mM MgCl2 at room temperature (20-22°C). Under these conditions, the recoveries obtained with PEG were comparable to those obtained with ethanol. We have found that precipitation with ethanol is best done at room temperature if recovery alone is the criterion. Precipitation of DNA at room temperature has the added advantage of reducing salt contamination; in fact, precipitation with PEG or ethanol at room temperature enabled us to recover DNA from CsCl gradient without any dialysis. &nbsp;only fragments above 150 bp were efficiently precipitated by PEG while ethanol precipitated even 26 and 34 bp fragments efficiently. Thus, while PEG cannot be used for precipitation of DNA fragments less than 150 bp in size, the reagent is ideally suited for removal of low-molecularweight DNA fragments such as those obtained on double digestion with restriction enzymes. Washing twice with 70% ethanol by centrifugation for 5 min at room temperature was found to effectively remove the leftover PEG. DNA thus obtained could be digested well with restriction enzymes and gave good transformation efficiency
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