Editing MS reports 5 23 2017-5 26 2017

== 05/23/2017 ==

Plasmid transformation. 483/1464/1946/1497 transfer into Nico21(DE3) PlysN, culture with LB/K/C media.

Order shipment of 4865 (phi29 (φ29) DNA Polymerase).

Sorting <span style="color: rgb(51, 51, 51);  font-family: arial, 宋体, sans-serif;  font-size: 12px;  font-style: normal;  font-variant-ligatures: normal;  font-variant-caps: normal;  font-weight: normal;  letter-spacing: normal;  orphans: 2;  text-align: start;  text-indent: 0px;  text-transform: none;  white-space: normal;  widows: 2;  word-spacing: 0px;  -webkit-text-stroke-width: 0px;  background-color: rgb(255, 255, 255);  text-decoration-style: initial;  text-decoration-color: initial;  display: inline !important;  float: none">refrigerator</span>.

Order shipment of 4866 (HTN-GFP, Cell-Permeable Green Fluorescent Protein).

Culture 1613 1782 2196 1498 2295 for expression screening.

run SDS-PAGE gel '''1811'''<span style="font-family: sans-serif;  font-size: 14px;  font-style: normal;  font-variant-ligatures: normal;  font-variant-caps: normal;  font-weight: normal;  letter-spacing: normal;  text-align: start;  text-indent: 0px;  text-transform: none;  white-space: normal;  word-spacing: 0px;  -webkit-text-stroke-width: 0px;  background-color: rgb(255, 255, 255);  text-decoration-style: initial;  text-decoration-color: initial;  display: inline !important;  float: none">VPol </span>'''/ 1995'''<span style="font-family: sans-serif;  font-size: 14px;  font-style: normal;  font-variant-ligatures: normal;  font-variant-caps: normal;  font-weight: normal;  letter-spacing: normal;  text-align: start;  text-indent: 0px;  text-transform: none;  white-space: normal;  word-spacing: 0px;  -webkit-text-stroke-width: 0px;  background-color: rgb(255, 255, 255);  text-decoration-style: initial;  text-decoration-color: initial;  display: inline !important;  float: none">Kfu</span>'''/ 2409'''<span style="font-family: sans-serif;  font-size: 14px;  font-style: normal;  font-variant-ligatures: normal;  font-variant-caps: normal;  font-weight: normal;  letter-spacing: normal;  text-align: start;  text-indent: 0px;  text-transform: none;  white-space: normal;  word-spacing: 0px;  -webkit-text-stroke-width: 0px;  background-color: rgb(255, 255, 255);  text-decoration-style: initial;  text-decoration-color: initial;  display: inline !important;  float: none">iFLP</span>'''/ 2295'''<span style="font-family: sans-serif;  font-size: 14px;  font-style: normal;  font-variant-ligatures: normal;  font-variant-caps: normal;  font-weight: normal;  letter-spacing: normal;  text-align: start;  text-indent: 0px;  text-transform: none;  white-space: normal;  word-spacing: 0px;  -webkit-text-stroke-width: 0px;  background-color: rgb(255, 255, 255);  text-decoration-style: initial;  text-decoration-color: initial;  display: inline !important;  float: none">yPolyA-Pol</span>'''/ 1458'''<span style="font-family: sans-serif;  font-size: 14px;  font-style: normal;  font-variant-ligatures: normal;  font-variant-caps: normal;  font-weight: normal;  letter-spacing: normal;  text-align: start;  text-indent: 0px;  text-transform: none;  white-space: normal;  word-spacing: 0px;  -webkit-text-stroke-width: 0px;  background-color: rgb(255, 255, 255);  text-decoration-style: initial;  text-decoration-color: initial;  display: inline !important;  float: none">KOD / </span>'''1715Pfu / 1315Mth RNA Ligase''' 05/23/2017

{| style="width: 500px" cellspacing="1" cellpadding="1" border="1"
|-
| Number<br/>
| 1<br/>
| 2<br/>
| 3<br/>
| 4<br/>
| 5<br/>
| 6<br/>
| 7<br/>
| 8<br/>
| 9<br/>
| 10<br/>
| 11<br/>
| 12<br/>
|-
| sample<br/>
| 1811<br/>
| <span style="color:#000000">1995</span><br/>
| 
2409

1

| 
2409

2

| 
2295

1

| 
2295

2

| 
1458

1

| 
1458

2

| MW<br/>
| 
1715

13

| 
1715

16

| 
1315

41

|-
| uL<br/>
| 0.2<br/>
| 0.4<br/>
| 1.8<br/>
| 1.8<br/>
| 1.5<br/>
| 1.2<br/>
| 0.2<br/>
| 0.4<br/>
| 10<br/>
| 0.8<br/>
| 1.3<br/>
| 0.5<br/>
|-
| ddH<sub>2</sub>O<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| \<br/>
| 15<br/>
| 15<br/>
| 15<br/>
|}

[[File:Protein Expression 1811 1995 2409 2295 1458 1715 1315 05 23 2017.jpg|RTENOTITLE]]



== 05/24/2017 ==

Use IPTG to induce 1613pET28-cold-GST-3C 1782Tth-Ligase 2196PBCV-1-Lig 1498TaqDNALigase 2295yPolyA-Pol for expression screening. Spin down cells, wash with Lysis Buffer, break down through blunted needle, and incubate with 50 ul regenerated Ni beads. Wash Ni beads, prepare to run SDS-PAGE gel.

Select one colony to culture 483 Tth Polymerase /1464 T7 DNA Ligase / 1946 TdT bovine / 1497 ToughTaq in 15ml LB/K/C media.

Quote for Dr. Kato, GRred.

Deal with order 4867.

Data management.

Cell culture, 1708 HTNCre.

== 05/25/2017 ==

Use IPTG to induce 483 Tth Polymerase /1464 T7 DNA Ligase / 1946 TdT bovine / 1497 ToughTaq for expression screening. Spin down cells, wash with Lysis Buffer, break down through blunted needle, and incubate with 50 ul regenerated Ni beads. Wash Ni beads, prepare to run SDS-PAGE gel.

Culture 1708HTNCre in 8L LB media. Induce with IPTG.

Culture ZXPmp / 818 / 819 / 820.

Dialysis of 1715Pfu and 1315 Mth RNA Ligase. The final concentration of 1715 Pfu is 4.10 mg/ml, totally 7ml, 28.70mg. The final concentration of 1315 Mth RNA Ligase is 6.50 mg/ml, totally 18.8ml, 122.20mg.

Small scale expression screening of 1613pET28-cold-GST-3C / 1782Tth-Ligase / 2196PBCV-1-Lig / 1498TaqDNALigase / 2295yPolyA-Pol. Run SDS-PAGE gel.

{| cellspacing="1" cellpadding="1" border="1"
|-
| number<br/>
| 1<br/>
| 2<br/>
| 3<br/>
| 4<br/>
| 5<br/>
| 6<br/>
| 7<br/>
| 8<br/>
| 9<br/>
| 10<br/>
| 11<br/>
|-
| sample<br/>
| 
1613

P

| 
<span style="color:#000000">1782</span>

<span style="color:#000000">P</span>

| 
2196

P

| 
1498

P

| 
2295

P

| 
MW

| 
1613

S

| 
<span style="color:#000000">1782</span>

<span style="color:#000000">S</span>

| 
2196

S

| 
1498

S

| 
2295

S

|-
| uL<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 10<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
|}

S: use lysis buffer S to break down cell, spin down and collect supernatant.

P: use lysis buffer P to wash sediment, sse blunted needle to break pellet, spin down and collect supernatant. [[File:Protein Screening 1613 1782 2196 1498 2295 05 25 2017.jpg|RTENOTITLE]]<br/>Cell culture of 1782 <span style="color: rgb(37, 37, 37);  font-family: sans-serif;  font-size: 14px;  font-style: normal;  font-variant-ligatures: normal;  font-variant-caps: normal;  font-weight: normal;  letter-spacing: normal;  orphans: 2;  text-align: start;  text-indent: 0px;  text-transform: none;  white-space: normal;  widows: 2;  word-spacing: 0px;  -webkit-text-stroke-width: 0px;  background-color: rgb(255, 255, 255);  text-decoration-style: initial;  text-decoration-color: initial;  display: inline !important;  float: none">Tth-Ligase</span>

== 05/26/2017 ==

Prepare LB media (20L).

Spin down 1708 HTNCre, wash with buffer A, break down through homogenizer, collect supernatant, load onto Ni column.

Troubleshoot with printer, load paper.

Deal with order 4868.

Small scale expression screening of 483 Tth Polymerase /1464 T7 DNA Ligase / 1946 TdT bovine / 1497 ToughTaq. Run SDS-PAGE gel.

{| cellspacing="1" cellpadding="1" border="1"
|-
| number<br/>
| 1<br/>
| 2<br/>
| 3<br/>
| 4<br/>
| 5<br/>
| 6<br/>
| 7<br/>
| 8<br/>
| 9<br/>
| 10<br/>
| 11<br/>
| 12<br/>
|-
| sample<br/>
| 
483

P

| 
<span style="color:#000000">1464</span>

<span style="color:#000000">P</span>

| 
1946

P

| 
1497

P

| MW<br/>
| 
483

S

| 
1464

S

| 
<span style="color:#000000">1946</span>

<span style="color:#000000">S</span>

| 
1497

S

| 
483

U

| 
1464

U

| 
1946

U

|-
| uL<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 10<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
| 15<br/>
|}

S: use lysis buffer S to break down cell, spin down and collect supernatant.

P: use lysis buffer P to wash sediment, sse blunted needle to break pellet, spin down and collect supernatant.

U: Uninduced sample. S and P induced with IPTG.

[[File:Protein Expression 483 1464 1946 1497 05 26 2017.jpg]]

Lane 6~9 have bands. It means there is protein expression occur in both induced sample.

Lane 2 is brighter than lane 7, both of the two lanes load 1464 T7 DNA Ligase. It means there is more protein in the sediment than the supernatant.

There is no band in lane 10~12. Use these 3 lanes as negative control.
[[Category:Reports]]