Peptides for Transfection

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pH responsive LAH4- L1 peptide 

[edit]

https://pubs.acs.org/doi/abs/10.1021/acs.molpharmaceut.6b00338 

https://www.nature.com/articles/s41598-017-10049-y

Peptide
NLS 

Diameter ± SD (nm)  Zeta Potential ± SD (mV) 
Transfection Efficiency
LAH4-L1

KKALLAHALHLLALLALHLAHALKKA 
226.7 ± 31.7
+2.2 ± 0.9 
low
PK1-LAH4-L1 (PK1)
SV40 
PKKKRKVG CG KKALLAHALHLLALLALHLAHALKKA
164.9 ± 1.3
+10.1 ± 2.1 
High
PK2-LAH4-L1 (PK2) 
Reversed SV40 
VKRKKKPG CG KKALLAHALHLLALLALHLAHALKKA
130.1 ± 1.1 
+13.3 ± 1.6  
High++

KR-LAH4-L1  (KR) 

Nucleoplasmin 

KRPAATKKAGQAKKKKG CG KKALLAHALHLLALLAL HLAHALKKA

184.6 ± 6.8 
+24.2 ± 0.9  
high
NQ-LAH4-L1 (NQ)

NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQG GYG CG KKALLAHALHLLALLALHLAHALKKA
354.5 ± 81.5
N.A.  

SV40

PKKKRKV
563.3 
−3.67  
no
CSV40C
CPKKKRKVC
235.8 
4.1
no
STR-CSV40C*

CH3(CH2)16-CONH-CPKKKRKVC
85.0
33.0
high
STR-CH2SV40H2C *

CH3(CH2)16-CONH-CHHPKKKRKVHHC
89.2
29.1
high+


  • STR was conjugated to the N-terminal of CSV40C and STR-CH2SV40H2C  using the solid-phase peptide synthesis method.

DNA transfection. A549, Calu-3, RAW264.7 and JAWSII cells were transfected with peptide/DNA complexes at 1 µg luciferase plasmid per well in 24-well plates. Lipofectamine™ 2000 was used as control. The complexes were prepared at 5:1, 10:1 and 15:1 ratios (w/w) in Opti-MEM I reduced serum medium. The cells were transfected when they reached 70-80% confluency. After 5 h of incubation with the complexes at 37 °C, the transfection media were removed and replaced with serum supplemented cell culture media. At 24 h post-transfection, the cells were rinsed and lysed in 100 µl reporter lysis buffer. The luciferase expression was detected using the luciferase assay system according to the manufacturer's protocol. The results were expressed as relative light unit (RLU) per mg of total protein. For transfection with growth-arrested cells, the standard double thymidine block method was employed as previously reported.32 A549 cells were seeded at a density of 5 × 104 cells per well in 24-well plate for overnight. The cell culture medium was then replaced with one containing thymidine (2mM). After 19 h of incubation, the cells were washed and incubated with thymidine-free culture medium. After 9 h, thymidine was added to the culture medium and the cells were incubated for a further 17 h. The cells were washed again. Peptide/DNA complexes prepared in Opti-MEM I reduced serum medium containing thymidine were added to the cells. After 5 h of incubation, the transfection medium was removed and replaced with fresh culture medium. The luciferase expression was examined at 24 h post-transfection as described above.

List of NLS 

[edit]
NLSAnnotation
KRx{10}KKKLNucleoplasmin
PKKKRKVSV40,LrgT
PKKNRLRRPBRCA1
PKRPRDRHDGELGGRKRARGVirD2-Cterm
PLLKKIKQc-myb
PNKKKRKSV40(VP2)
PPQKKIKSN-myc
PPRIYPQLPSAPTBDV-P
PPRKKRTVVNS5A
PPVKRERTSRanBP3
PQPKKKPp53
PQSRKKLRMax
PRGRRQPIPKARQPHCV
PRPRKIPRBDV-P
PRRGPRHCV
PRRRKSOX9
PYLNKRKGKPPho4p
PKKAREDpolyoma
PAKRARRGYKCPVcapsid
KRx{7,9}PQPKKKPp53-NLS1
KSKKKAQHIV1423
KTRKHRGL29
KVNSRKRRKEVPGPNGATEEDCTP
KVTKRKHDNEGSGSKRPKhum-Ku70
K[RK]{3,5}x{11,18}[RK]Kx{2,3}K
LEKKVKKKFDWCAprot.Hsci
LKDVRKRKLGPGHDNAseEBV
LKRKLQRPax-QNR
LKRPRSPSSEBNA1
MAPSAKATAAKKAVVKGTNGKKALKVRTSATFRLPKTLKLARL25
MNKIPIKDLLNPGMat-alpha
MPKTRRRPRRSQRKRPPTRex
MPTEERVRKRKESNRESARRSRYRKAAHLKopaque2
NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYM9
PAAKRVKLDlscMyc
QRKRQKNF-kB
RAIKRRPGLDFDDDGEGNSKFLRhARNT
REKKEKEQKEKCAprot.Hsc9
RRPSx{22}RRKRQPK-A
RRRx{11}KRRKCBP80
RRSMKRKhVDR
RVHPYQRQKI-5
SANKVTKNKSNSSPYLNKRGKPGPDSPho4
SDKKVRSRLIECATa.alpha
SKRVAKRKLc-erb-A
SxGTKRSYxxMFluA
TEKK[QG]KSILYDCAprot.Hsc3
TKRSxxxMinfluenzaNP
VNEAFETLKRCMyoD
VSRKRPRpolyoma
YKRPCKRSFIRFIDNAseEBV
YLTQETNKVETYKEQPLKTPGKKKKGKPPTHrP
YNNQSSNFGPMKGGNM9
[KAR]TPIQKHWRPTVLTEGPPVKIRIETGEWE[KA]ASVintegrase
RRMKWKKPDX-1
RRKGKEKHunt.Dis.pro
RGRRRRQRAmida
RIRKKLRp54
RKCLQAGMNLEARKTKKhGlu.cort.
RKEWLTNFMEDRRQRKLhDNAtopoII
RKKRKx{9}KAKKSKN1N2
RKKRRQRRRHIV-1Tat
RKRAFHGDDPFGEGPPDKKICP-8
RKRIREDRKATTAQKVQQMKQRLNENERKRKRTCPTP
RKRKKystDNApolalpha
RKRKKMPASQRSKRRKThBLM
RKRRRAmida
RLKKLKCSKx{19}KTKRGAL4
RPRRKSRY
RQARRNRRRRWRHIV-1Rev
RRERNKMAAAKCRNRRRcFOS
RRERx{4}RPRKIPRBDV-P
[KR]{4}x{20,24}K{1,4}xK
KKKRERLDRCP
KRKRRPBRCA1
IKYFKKFPKDyeast,SKI3
HRKYEAPRHx{6}PRKRL3
KRKx{11}KKKSKKhpoly(ADP)poly
HRIEEKRKRTYETFKSINF-kB
KRKx{22}KELQKQITKHIV-1
KRMRNRIAASKCRKRKLcJUN
KRPAATKKAGQAKKKKNucloplasmin
EEDGPQKKKRRLpolyomaVP2
KRPACTLKPECVQQLLVCSQEAKKHCDA
KRPAEDMEEEQAFKRSRhumKprotein
KRPMNAFIVWSRDQRRKSRY
KRPMNAFMVWAQAARRKSOX9
KRKKEMANKSAPEAKKKKNucleolin
APKRKSGVSKCpolyomaVP1
KRAAEDDEDDDVDTKKQKhProTalpha
KKKRRSREKTCF-1
KKKKKEEEGEGKKKact/inh,betaA
KKKYKLKHIV1422
KKQTTLAFKPIKKGKKRhDNAtopoII
CKRKTTNADRRKAMyoD
KKEKKKSKKdyskerin
KHRKHPGL29
KRx{9}KTKKTHOV
CYGSKNTGAKKRKIDDA
KKSKKGRQEALERLKKAhDNApolalpha
KDCVINKHHRNRCQYCRLQRTR2
KAKRQRv-Rel
KKx{15}KKRKDNAhelicaseQ1
EYLSRKGKLELVirD2-Nterm
KRQRx{20}KKSKKMitosin
KRSAEGGNPPKPLKKLRp110RB1
APTKRKGSSV40()VP1
KKKKRKREKLEF-1
KRPRPadenovE1a
GRKRKKRTTst1/Oct6
HKKKKIRTSPTFTTPKTLRLRRQPKYPRKSAPRRNKLDHYBIB
GGGx{3}KNRRx{6}RGGRNNab2
GKKRSKAH2B
GKKKYKLKHHIV-1